PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G075000.1.p
Common NameGLYMA_15G075000, LOC100814407
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 181aa    MW: 20644.6 Da    PI: 9.1273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G075000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-13960255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                         r+  +++Er+RR++++  f eL +l+P++   +sk   s  + Le+A++YIk+Lq
  Glyma.15G075000.1.p  9 RVERKIIERNRRNQMKALFRELNSLVPHQ---SSKEaISLPDQLEEATNYIKKLQ 60
                         77889***********************8...56666*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-13474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-7564No hitNo description
PROSITE profilePS5088812.913759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9960IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-12973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-51365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MENNPSSSRV ERKIIERNRR NQMKALFREL NSLVPHQSSK EAISLPDQLE EATNYIKKLQ  60
INLEKMKDKK NMLLGIERPN VRMNNGGRTV RLNSPRIEIQ QMGSALEVVL ITGFDCQFMF  120
SETIRVLHEE GVDVVNASYK VIEGAVFHSI HCQDRESANG AARISERLKN FIYDSSYSAF  180
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150383e-97AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547148.11e-131PREDICTED: uncharacterized protein LOC100814407
TrEMBLK7MA621e-131K7MA62_SOYBN; Uncharacterized protein
STRINGGLYMA15G08140.21e-131(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-46bHLH family protein